STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabpaGA binding protein transcription factor subunit alpha. (440 aa)    
Predicted Functional Partners:
gabpb2
GA binding protein transcription factor subunit beta 2a.
    
 0.995
LOC110947412
F11 receptor, tandem duplicate 1.
    
  0.833
srf
MADS-box domain-containing protein.
    
 0.711
SRF
Serum response factor.
    
 0.711
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 0.685
tfam
Transcription factor A, mitochondrial.
   
 
 0.669
LOC110965242
E74-like ETS transcription factor 1.
    
0.665
LOC110951969
ETS domain-containing protein.
    
0.665
runx3
Runt-related transcription factor.
   
 0.661
LOC110963107
Runt-related transcription factor.
   
 0.661
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.