LOC110968909 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC110968909

Amino acid transporter. (463 aa)

Predicted Functional Partners:

LOC110953515

0.805

LOC110948948

0.767

LOC110957807

0.715

slc1a2

0.715

LOC110951648

0.715

slc6a3

0.708

slc6a2

0.708

ENSAPOP00000008856

0.571

ENSAPOP00000008954

0.571

LOC110969720

0.568

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000008856	LOC110948948	ENSAPOP00000008856	ENSAPOP00000034890	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.481
ENSAPOP00000008856	LOC110951648	ENSAPOP00000008856	ENSAPOP00000031789	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.490
ENSAPOP00000008856	LOC110953515	ENSAPOP00000008856	ENSAPOP00000025047	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.481
ENSAPOP00000008856	LOC110968909	ENSAPOP00000008856	ENSAPOP00000001040	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.571
ENSAPOP00000008856	LOC110969720	ENSAPOP00000008856	ENSAPOP00000018032	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.637
ENSAPOP00000008856	slc6a2	ENSAPOP00000008856	ENSAPOP00000019956	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.471
ENSAPOP00000008856	slc6a3	ENSAPOP00000008856	ENSAPOP00000019397	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.471
ENSAPOP00000008954	LOC110948948	ENSAPOP00000008954	ENSAPOP00000034890	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.481
ENSAPOP00000008954	LOC110951648	ENSAPOP00000008954	ENSAPOP00000031789	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.490
ENSAPOP00000008954	LOC110953515	ENSAPOP00000008954	ENSAPOP00000025047	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.481
ENSAPOP00000008954	LOC110968909	ENSAPOP00000008954	ENSAPOP00000001040	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.571
ENSAPOP00000008954	LOC110969720	ENSAPOP00000008954	ENSAPOP00000018032	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.637
ENSAPOP00000008954	slc6a2	ENSAPOP00000008954	ENSAPOP00000019956	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.471
ENSAPOP00000008954	slc6a3	ENSAPOP00000008954	ENSAPOP00000019397	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.471
LOC110948948	ENSAPOP00000008856	ENSAPOP00000034890	ENSAPOP00000008856	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.481
LOC110948948	ENSAPOP00000008954	ENSAPOP00000034890	ENSAPOP00000008954	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.481
LOC110948948	LOC110951648	ENSAPOP00000034890	ENSAPOP00000031789	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.814
LOC110948948	LOC110953515	ENSAPOP00000034890	ENSAPOP00000025047	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.873
LOC110948948	LOC110957807	ENSAPOP00000034890	ENSAPOP00000015900	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.759
LOC110948948	LOC110968909	ENSAPOP00000034890	ENSAPOP00000001040	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Amino acid transporter.	0.767