LOC110970835 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110970835

Ring finger protein 175. (313 aa)

Predicted Functional Partners:

rnf151

0.674

cfap161

0.663

mospd2

0.659

ENSAPOP00000003246

0.657

rnf122

0.646

dis3l2

0.622

RNF5

0.620

tmtc3

0.616

rnf126

0.551

LOC110953537

0.551

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000003246	LOC110970835	ENSAPOP00000003246	ENSAPOP00000001048	Zinc finger GATA like protein 1.	Ring finger protein 175.	0.657
ENSAPOP00000003246	cfap161	ENSAPOP00000003246	ENSAPOP00000019895	Zinc finger GATA like protein 1.	Cilia and flagella associated protein 161.	0.778
ENSAPOP00000003246	dis3l2	ENSAPOP00000003246	ENSAPOP00000017121	Zinc finger GATA like protein 1.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.725
ENSAPOP00000003246	mospd2	ENSAPOP00000003246	ENSAPOP00000021400	Zinc finger GATA like protein 1.	Motile sperm domain containing 2.	0.778
LOC110953537	LOC110970835	ENSAPOP00000002663	ENSAPOP00000001048	Ring finger protein 126.	Ring finger protein 175.	0.551
LOC110953537	rnf151	ENSAPOP00000002663	ENSAPOP00000033027	Ring finger protein 126.	Ring finger protein 151.	0.506
LOC110970835	ENSAPOP00000003246	ENSAPOP00000001048	ENSAPOP00000003246	Ring finger protein 175.	Zinc finger GATA like protein 1.	0.657
LOC110970835	LOC110953537	ENSAPOP00000001048	ENSAPOP00000002663	Ring finger protein 175.	Ring finger protein 126.	0.551
LOC110970835	RNF5	ENSAPOP00000001048	ENSAPOP00000016068	Ring finger protein 175.	Ring finger protein 5.	0.620
LOC110970835	cfap161	ENSAPOP00000001048	ENSAPOP00000019895	Ring finger protein 175.	Cilia and flagella associated protein 161.	0.663
LOC110970835	dis3l2	ENSAPOP00000001048	ENSAPOP00000017121	Ring finger protein 175.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.622
LOC110970835	mospd2	ENSAPOP00000001048	ENSAPOP00000021400	Ring finger protein 175.	Motile sperm domain containing 2.	0.659
LOC110970835	rnf122	ENSAPOP00000001048	ENSAPOP00000011859	Ring finger protein 175.	Ring finger protein 122.	0.646
LOC110970835	rnf126	ENSAPOP00000001048	ENSAPOP00000002487	Ring finger protein 175.	RING-type domain-containing protein.	0.551
LOC110970835	rnf151	ENSAPOP00000001048	ENSAPOP00000033027	Ring finger protein 175.	Ring finger protein 151.	0.674
LOC110970835	tmtc3	ENSAPOP00000001048	ENSAPOP00000013392	Ring finger protein 175.	Transmembrane O-mannosyltransferase targeting cadherins 3.	0.616
RNF5	LOC110970835	ENSAPOP00000016068	ENSAPOP00000001048	Ring finger protein 5.	Ring finger protein 175.	0.620
RNF5	rnf122	ENSAPOP00000016068	ENSAPOP00000011859	Ring finger protein 5.	Ring finger protein 122.	0.471
RNF5	tmtc3	ENSAPOP00000016068	ENSAPOP00000013392	Ring finger protein 5.	Transmembrane O-mannosyltransferase targeting cadherins 3.	0.557
cfap161	ENSAPOP00000003246	ENSAPOP00000019895	ENSAPOP00000003246	Cilia and flagella associated protein 161.	Zinc finger GATA like protein 1.	0.778