adat2 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

adat2

CMP/dCMP-type deaminase domain-containing protein. (186 aa)

Predicted Functional Partners:

adat3

0.995

tyms

0.883

rbks

0.880

rpusd1

0.875

rpusd2

0.865

ENSAPOP00000018336

0.862

LOC110951087

0.843

pudp

0.813

uprt

0.811

ENSAPOP00000019755

0.809

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000018336	adat2	ENSAPOP00000018336	ENSAPOP00000001050	Uncharacterized protein.	CMP/dCMP-type deaminase domain-containing protein.	0.862
ENSAPOP00000018336	adat3	ENSAPOP00000018336	ENSAPOP00000012813	Uncharacterized protein.	Adenosine deaminase tRNA specific 3.	0.880
ENSAPOP00000019755	LOC110951087	ENSAPOP00000019755	ENSAPOP00000008832	Dolichol kinase.	RNA pseudouridine synthase D4.	0.661
ENSAPOP00000019755	adat2	ENSAPOP00000019755	ENSAPOP00000001050	Dolichol kinase.	CMP/dCMP-type deaminase domain-containing protein.	0.809
ENSAPOP00000019755	adat3	ENSAPOP00000019755	ENSAPOP00000012813	Dolichol kinase.	Adenosine deaminase tRNA specific 3.	0.585
ENSAPOP00000019755	rpusd1	ENSAPOP00000019755	ENSAPOP00000018857	Dolichol kinase.	RNA pseudouridine synthase domain containing 1.	0.661
ENSAPOP00000019755	rpusd2	ENSAPOP00000019755	ENSAPOP00000013171	Dolichol kinase.	RNA pseudouridine synthase domain containing 2.	0.661
LOC110951087	ENSAPOP00000019755	ENSAPOP00000008832	ENSAPOP00000019755	RNA pseudouridine synthase D4.	Dolichol kinase.	0.661
LOC110951087	adat2	ENSAPOP00000008832	ENSAPOP00000001050	RNA pseudouridine synthase D4.	CMP/dCMP-type deaminase domain-containing protein.	0.843
LOC110951087	adat3	ENSAPOP00000008832	ENSAPOP00000012813	RNA pseudouridine synthase D4.	Adenosine deaminase tRNA specific 3.	0.574
LOC110951087	rbks	ENSAPOP00000008832	ENSAPOP00000011156	RNA pseudouridine synthase D4.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.747
LOC110951087	rpusd1	ENSAPOP00000008832	ENSAPOP00000018857	RNA pseudouridine synthase D4.	RNA pseudouridine synthase domain containing 1.	0.648
LOC110951087	rpusd2	ENSAPOP00000008832	ENSAPOP00000013171	RNA pseudouridine synthase D4.	RNA pseudouridine synthase domain containing 2.	0.549
adat2	ENSAPOP00000018336	ENSAPOP00000001050	ENSAPOP00000018336	CMP/dCMP-type deaminase domain-containing protein.	Uncharacterized protein.	0.862
adat2	ENSAPOP00000019755	ENSAPOP00000001050	ENSAPOP00000019755	CMP/dCMP-type deaminase domain-containing protein.	Dolichol kinase.	0.809
adat2	LOC110951087	ENSAPOP00000001050	ENSAPOP00000008832	CMP/dCMP-type deaminase domain-containing protein.	RNA pseudouridine synthase D4.	0.843
adat2	adat3	ENSAPOP00000001050	ENSAPOP00000012813	CMP/dCMP-type deaminase domain-containing protein.	Adenosine deaminase tRNA specific 3.	0.995
adat2	pudp	ENSAPOP00000001050	ENSAPOP00000005340	CMP/dCMP-type deaminase domain-containing protein.	Pseudouridine 5'-phosphatase.	0.813
adat2	rbks	ENSAPOP00000001050	ENSAPOP00000011156	CMP/dCMP-type deaminase domain-containing protein.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.880
adat2	rpusd1	ENSAPOP00000001050	ENSAPOP00000018857	CMP/dCMP-type deaminase domain-containing protein.	RNA pseudouridine synthase domain containing 1.	0.875