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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110962938Asp-B-Hydro_N domain-containing protein. (162 aa)    
Predicted Functional Partners:
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.788
pold1
DNA polymerase.
   
 0.779
fancm
Helicase C-terminal domain-containing protein.
    
 0.721
ENSAPOP00000011687
Helicase ATP-binding domain-containing protein.
    
 0.721
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.708
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.703
ENSAPOP00000022281
Small nuclear ribonucleoprotein polypeptide F.
    
  0.688
DDX20
DEAD-box helicase 20.
   
 0.685
LOC110946759
Si:dkey-28b4.7.
    
 0.674
LOC110945714
DNA polymerase delta subunit 4-like.
    
 0.674
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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