LOC110970219 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110970219

Malate synthase-like. (521 aa)

Predicted Functional Partners:

cs

0.999

rpp14

0.998

ENSAPOP00000026781

0.995

pc

0.993

acaa1

0.989

scp2

0.989

LOC110967990

0.989

suclg1

0.988

aacs

0.987

acss3

0.987

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000026781	LOC110970219	ENSAPOP00000026781	ENSAPOP00000001077	Ldh_1_N domain-containing protein.	Malate synthase-like.	0.995
ENSAPOP00000026781	aacs	ENSAPOP00000026781	ENSAPOP00000004767	Ldh_1_N domain-containing protein.	Acetoacetyl-CoA synthetase.	0.468
ENSAPOP00000026781	acaa1	ENSAPOP00000026781	ENSAPOP00000001697	Ldh_1_N domain-containing protein.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.537
ENSAPOP00000026781	acss3	ENSAPOP00000026781	ENSAPOP00000015984	Ldh_1_N domain-containing protein.	Acyl-CoA synthetase short chain family member 3.	0.468
ENSAPOP00000026781	cs	ENSAPOP00000026781	ENSAPOP00000019023	Ldh_1_N domain-containing protein.	Citrate synthase; Belongs to the citrate synthase family.	0.998
ENSAPOP00000026781	pc	ENSAPOP00000026781	ENSAPOP00000034096	Ldh_1_N domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.972
ENSAPOP00000026781	rpp14	ENSAPOP00000026781	ENSAPOP00000004116	Ldh_1_N domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.657
ENSAPOP00000026781	suclg1	ENSAPOP00000026781	ENSAPOP00000005509	Ldh_1_N domain-containing protein.	Succinate-CoA ligase, alpha subunit.	0.988
LOC110967990	LOC110970219	ENSAPOP00000029928	ENSAPOP00000001077	Sterol carrier protein 2b.	Malate synthase-like.	0.989
LOC110967990	aacs	ENSAPOP00000029928	ENSAPOP00000004767	Sterol carrier protein 2b.	Acetoacetyl-CoA synthetase.	0.885
LOC110967990	acaa1	ENSAPOP00000029928	ENSAPOP00000001697	Sterol carrier protein 2b.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.967
LOC110967990	acss3	ENSAPOP00000029928	ENSAPOP00000015984	Sterol carrier protein 2b.	Acyl-CoA synthetase short chain family member 3.	0.885
LOC110967990	cs	ENSAPOP00000029928	ENSAPOP00000019023	Sterol carrier protein 2b.	Citrate synthase; Belongs to the citrate synthase family.	0.939
LOC110967990	pc	ENSAPOP00000029928	ENSAPOP00000034096	Sterol carrier protein 2b.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.519
LOC110967990	rpp14	ENSAPOP00000029928	ENSAPOP00000004116	Sterol carrier protein 2b.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.992
LOC110967990	scp2	ENSAPOP00000029928	ENSAPOP00000013819	Sterol carrier protein 2b.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.974
LOC110967990	suclg1	ENSAPOP00000029928	ENSAPOP00000005509	Sterol carrier protein 2b.	Succinate-CoA ligase, alpha subunit.	0.907
LOC110970219	ENSAPOP00000026781	ENSAPOP00000001077	ENSAPOP00000026781	Malate synthase-like.	Ldh_1_N domain-containing protein.	0.995
LOC110970219	LOC110967990	ENSAPOP00000001077	ENSAPOP00000029928	Malate synthase-like.	Sterol carrier protein 2b.	0.989
LOC110970219	aacs	ENSAPOP00000001077	ENSAPOP00000004767	Malate synthase-like.	Acetoacetyl-CoA synthetase.	0.987