Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
USP34Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (2625 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.984
rps27a
Ribosomal protein S27a.
   
 0.950
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.942
LOC110955211
Ash1 (absent, small, or homeotic)-like (Drosophila).
   
 
 0.909
ENSAPOP00000007183
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.871
birc6
Baculoviral IAP repeat containing 6.
   
 0.871
ENSAPOP00000003675
Ubiquitin-like domain-containing protein.
   
 0.867
ENSAPOP00000002041
Uncharacterized protein.
   
 0.865
LOC110957565
Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.
   
 0.865
phf3
PHD finger protein 3.
   
 
  0.852
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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