pdf protein (Acanthochromis polyacanthus) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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pdf

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (255 aa)

Predicted Functional Partners:

mtfmt

0.965

ENSAPOP00000034420

0.860

mrpl20

0.849

mrpl21

0.844

mrps16

0.812

mrps9

0.808

ENSAPOP00000021355

0.807

mrpl17

0.802

metap1

0.799

mrpl27

0.798

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000021355	metap1	ENSAPOP00000021355	ENSAPOP00000024121	Mitochondrial ribosomal protein S6.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.556
ENSAPOP00000021355	mrpl17	ENSAPOP00000021355	ENSAPOP00000029217	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.992
ENSAPOP00000021355	mrpl20	ENSAPOP00000021355	ENSAPOP00000009534	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.991
ENSAPOP00000021355	mrpl21	ENSAPOP00000021355	ENSAPOP00000026255	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L21.	0.986
ENSAPOP00000021355	mrpl27	ENSAPOP00000021355	ENSAPOP00000014147	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L27.	0.991
ENSAPOP00000021355	mrps16	ENSAPOP00000021355	ENSAPOP00000009763	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S16.	0.999
ENSAPOP00000021355	mrps9	ENSAPOP00000021355	ENSAPOP00000023413	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
ENSAPOP00000021355	mtfmt	ENSAPOP00000021355	ENSAPOP00000020481	Mitochondrial ribosomal protein S6.	Mitochondrial methionyl-tRNA formyltransferase.	0.467
ENSAPOP00000021355	pdf	ENSAPOP00000021355	ENSAPOP00000001136	Mitochondrial ribosomal protein S6.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.807
ENSAPOP00000034420	mrpl17	ENSAPOP00000034420	ENSAPOP00000029217	Cell division cycle associated 8.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.558
ENSAPOP00000034420	mrpl20	ENSAPOP00000034420	ENSAPOP00000009534	Cell division cycle associated 8.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.460
ENSAPOP00000034420	mrps16	ENSAPOP00000034420	ENSAPOP00000009763	Cell division cycle associated 8.	Mitochondrial ribosomal protein S16.	0.420
ENSAPOP00000034420	pdf	ENSAPOP00000034420	ENSAPOP00000001136	Cell division cycle associated 8.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.860
metap1	ENSAPOP00000021355	ENSAPOP00000024121	ENSAPOP00000021355	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Mitochondrial ribosomal protein S6.	0.556
metap1	mrpl17	ENSAPOP00000024121	ENSAPOP00000029217	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.694
metap1	mrpl20	ENSAPOP00000024121	ENSAPOP00000009534	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.445
metap1	mrpl21	ENSAPOP00000024121	ENSAPOP00000026255	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Mitochondrial ribosomal protein L21.	0.518
metap1	mrps16	ENSAPOP00000024121	ENSAPOP00000009763	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Mitochondrial ribosomal protein S16.	0.491
metap1	mrps9	ENSAPOP00000024121	ENSAPOP00000023413	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.552
metap1	pdf	ENSAPOP00000024121	ENSAPOP00000001136	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.799

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