Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110962072Tripartite motif containing 47. (478 aa)    
Predicted Functional Partners:
ifih1
Interferon induced with helicase C domain 1.
   
 0.566
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
    
 0.559
trim37
Tripartite motif containing 37.
    
 
 0.549
ro60
Ro60, Y RNA binding protein.
   
 0.531
LOC110960072
Caspase b, like; Belongs to the peptidase C14A family.
   
  0.525
trim44
Tripartite motif containing 44.
    
 
 0.519
ENSAPOP00000031993
Uncharacterized protein.
    
  0.505
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
  0.492
pycard
PYD and CARD domain containing.
    
  0.490
ENSAPOP00000034381
CARD domain-containing protein.
    
  0.490
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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