Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrm3Mitochondrial rRNA methyltransferase 3a. (441 aa)    
Predicted Functional Partners:
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
  
 
 0.976
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.962
malsu1
Si:zfos-1192g2.3.
   
 
 0.961
mrpl39
Mitochondrial ribosomal protein L39.
  
 
 0.956
mrpl28
Mitochondrial ribosomal protein L28.
    
   0.951
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.941
gtpbp10
GTP-binding protein 10 (putative).
  
 
 0.929
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.916
mrpl11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.916
mtg1
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 
 0.910
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
Server load: low (14%) [HD]