LOC110955274 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110955274

Uncharacterized protein. (351 aa)

Predicted Functional Partners:

naga

0.888

gla

0.884

hexb

0.881

hexa

0.881

LOC110964521

0.873

LOC110966274

0.844

B3GALT1

0.844

ENSAPOP00000019165

0.744

frem1

0.744

fam149b1

0.735

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GALT1	LOC110955274	ENSAPOP00000023514	ENSAPOP00000001252	Hexosyltransferase.	Uncharacterized protein.	0.844
B3GALT1	LOC110964521	ENSAPOP00000023514	ENSAPOP00000027550	Hexosyltransferase.	Uncharacterized protein.	0.891
B3GALT1	LOC110966274	ENSAPOP00000023514	ENSAPOP00000009417	Hexosyltransferase.	Hexosyltransferase.	0.873
B3GALT1	fam149b1	ENSAPOP00000023514	ENSAPOP00000023480	Hexosyltransferase.	Family with sequence similarity 149 member B1.	0.439
B3GALT1	gla	ENSAPOP00000023514	ENSAPOP00000010877	Hexosyltransferase.	Alpha-galactosidase.	0.847
B3GALT1	hexa	ENSAPOP00000023514	ENSAPOP00000005649	Hexosyltransferase.	Beta-hexosaminidase.	0.843
B3GALT1	hexb	ENSAPOP00000023514	ENSAPOP00000004384	Hexosyltransferase.	Beta-hexosaminidase.	0.843
B3GALT1	naga	ENSAPOP00000023514	ENSAPOP00000019412	Hexosyltransferase.	Alpha-galactosidase.	0.847
ENSAPOP00000019165	LOC110955274	ENSAPOP00000019165	ENSAPOP00000001252	Fras1 related extracellular matrix 1b.	Uncharacterized protein.	0.744
ENSAPOP00000019165	frem1	ENSAPOP00000019165	ENSAPOP00000025556	Fras1 related extracellular matrix 1b.	Fras1 related extracellular matrix 1a.	0.876
LOC110955274	B3GALT1	ENSAPOP00000001252	ENSAPOP00000023514	Uncharacterized protein.	Hexosyltransferase.	0.844
LOC110955274	ENSAPOP00000019165	ENSAPOP00000001252	ENSAPOP00000019165	Uncharacterized protein.	Fras1 related extracellular matrix 1b.	0.744
LOC110955274	LOC110964521	ENSAPOP00000001252	ENSAPOP00000027550	Uncharacterized protein.	Uncharacterized protein.	0.873
LOC110955274	LOC110966274	ENSAPOP00000001252	ENSAPOP00000009417	Uncharacterized protein.	Hexosyltransferase.	0.844
LOC110955274	fam149b1	ENSAPOP00000001252	ENSAPOP00000023480	Uncharacterized protein.	Family with sequence similarity 149 member B1.	0.735
LOC110955274	frem1	ENSAPOP00000001252	ENSAPOP00000025556	Uncharacterized protein.	Fras1 related extracellular matrix 1a.	0.744
LOC110955274	gla	ENSAPOP00000001252	ENSAPOP00000010877	Uncharacterized protein.	Alpha-galactosidase.	0.884
LOC110955274	hexa	ENSAPOP00000001252	ENSAPOP00000005649	Uncharacterized protein.	Beta-hexosaminidase.	0.881
LOC110955274	hexb	ENSAPOP00000001252	ENSAPOP00000004384	Uncharacterized protein.	Beta-hexosaminidase.	0.881
LOC110955274	naga	ENSAPOP00000001252	ENSAPOP00000019412	Uncharacterized protein.	Alpha-galactosidase.	0.888