Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000001268Collagen, type IV, alpha 1. (1211 aa)    
Predicted Functional Partners:
LOC110951090
Integrin beta; Belongs to the integrin beta chain family.
    
 0.900
LOC110954669
Integrin beta; Belongs to the integrin beta chain family.
    
 0.892
LOC110959321
Integrin beta; Belongs to the integrin beta chain family.
    
 0.892
LOC110965159
Integrin beta; Belongs to the integrin beta chain family.
    
 0.892
LOC110950824
Integrin beta; Belongs to the integrin beta chain family.
    
 0.892
LOC110967677
Integrin, alpha 11a; Belongs to the integrin alpha chain family.
    
 0.891
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
    
 0.891
ENSAPOP00000005817
Uncharacterized protein.
    
 0.891
LOC110950445
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.891
ENSAPOP00000007067
VWFA domain-containing protein.
    
 0.891
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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