Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110964810Rhomboid 5 homolog 1b (Drosophila). (903 aa)    
Predicted Functional Partners:
LOC110971065
ADAM metallopeptidase domain 17a.
    
 0.962
adam17
ADAM metallopeptidase domain 17b.
    
 0.962
frmd8
FERM domain containing 8.
     
 0.907
LOC110951316
Si:ch1073-396h14.1.
    
 0.863
adam10
Uncharacterized protein.
    
 0.783
LOC110950365
ADAM metallopeptidase domain 10b.
    
 0.783
krit1
KRIT1 ankyrin repeat containing.
     
 0.726
kank2
KN motif and ankyrin repeat domains 2.
     
 0.687
nprl3
NPR3-like, GATOR1 complex subunit.
      
 0.679
ngb
Neuroglobin; Belongs to the globin family.
      
 0.667
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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