STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110964810Rhomboid 5 homolog 1b (Drosophila). (903 aa)    
Predicted Functional Partners:
LOC110971065
ADAM metallopeptidase domain 17a.
    
 0.629
adam17
ADAM metallopeptidase domain 17b.
    
 0.629
LOC110951316
Si:ch1073-396h14.1.
    
 0.600
adam10
Uncharacterized protein.
    
 0.532
LOC110950365
ADAM metallopeptidase domain 10b.
    
 0.532
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.527
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
  
    0.527
kank2
KN motif and ankyrin repeat domains 2.
     
 0.524
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.520
nprl3
NPR3-like, GATOR1 complex subunit.
      
 0.520
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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