STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mecp2Methyl CpG binding protein 2. (532 aa)    
Predicted Functional Partners:
sin3a
SIN3 transcription regulator family member Aa.
    
 0.912
sin3b
SIN3 transcription regulator family member B.
    
 0.912
LOC110967500
HDAC_interact domain-containing protein.
    
 0.912
mta1
Metastasis associated 1.
   
 0.869
LOC110948364
Metastasis associated 1 family, member 3.
   
 0.869
mta2
Metastasis associated 1 family, member 2.
   
 0.869
LOC110964609
Transducin (beta)-like 1 X-linked receptor 1b.
    
 0.862
TBL1XR1
Transducin beta like 1 X-linked receptor 1.
    
 0.862
LOC110957633
Transducin beta like 1 X-linked.
    
 0.862
HDAC1
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.851
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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