Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000001388YqaJ domain-containing protein. (370 aa)    
Predicted Functional Partners:
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.690
LOC110962950
Unc4.1 homeobox (C. elegans).
   
  
 0.633
uncx
UNC homeobox.
   
  
 0.633
srf
MADS-box domain-containing protein.
    
 0.570
SRF
Serum response factor.
    
 0.570
ldb1
LIM-domain binding 1b.
    
 0.518
LOC110959119
LIM domain binding 1a.
    
 0.518
LOC110956568
LIM domain binding 2a.
    
 0.518
ENSAPOP00000032746
Uncharacterized protein.
    
   0.508
ENSAPOP00000032748
WD_REPEATS_REGION domain-containing protein.
    
   0.508
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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