STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110958699Sortilin. (823 aa)    
Predicted Functional Partners:
LOC110952577
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 0.958
nts
Neurotensin.
    
 
 0.955
LOC110958259
Sortilin.
  
  
 
0.894
psma1
Proteasome subunit alpha type.
    
   0.861
psmb1
Proteasome subunit beta.
    
   0.861
psma8
Proteasome subunit alpha type.
    
   0.861
ngfr
Nerve growth factor receptor b.
    
 0.833
ENSAPOP00000030916
Sortilin.
  
  
 
0.828
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
    
 
 0.824
LOC110949617
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.781
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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