STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110968900Extracellular matrix protein 1a. (139 aa)    
Predicted Functional Partners:
zbtb44
Zinc finger and BTB domain containing 44.
    
 
 0.691
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.683
mrps14
Mitochondrial ribosomal protein S14.
      
 0.683
slc39a13
Solute carrier family 39 member 13.
      
 0.683
LOC110950641
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
      
 0.682
LOC110967318
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.666
LOC110950667
C-type lectin domain family 3, member Ba.
   
 
 0.624
LOC110964836
C-type lectin domain family 3, member Bb.
   
 
 0.624
zswim8
Zinc finger, SWIM-type containing 8.
      
 0.617
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 
 0.552
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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