Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTPRDUncharacterized protein. (1543 aa)    
Predicted Functional Partners:
SLITRK1
SLIT and NTRK like family member 1.
    
 0.927
LOC110964442
SLIT and NTRK-like family, member 2.
    
 0.922
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.917
il1rap
Uncharacterized protein.
    
 0.900
LOC110946065
SLIT and NTRK-like family, member 3a.
    
 0.900
LOC110971286
Uncharacterized protein.
    
 0.900
LOC110951067
SLIT and NTRK-like family, member 3b.
    
  0.885
LOC110957012
Uncharacterized protein.
   
 0.861
slitrk4
SLIT and NTRK-like family, member 4.
    
 0.829
LOC110948995
SLIT and NTRK-like family, member 5b.
    
  0.826
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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