lrwd1 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lrwd1

Leucine-rich repeats and WD repeat domain containing 1. (738 aa)

Predicted Functional Partners:

orc5

0.995

orc3

0.995

orc4

0.995

orc2

0.993

cul1

0.805

skp2

0.779

ENSAPOP00000024610

0.772

ENSAPOP00000028898

0.772

LOC110956535

0.744

ENSAPOP00000006666

0.720

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000006666	LOC110956535	ENSAPOP00000006666	ENSAPOP00000020537	Uncharacterized protein.	Von Willebrand factor A domain containing 5B2.	0.736
ENSAPOP00000006666	lrwd1	ENSAPOP00000006666	ENSAPOP00000001467	Uncharacterized protein.	Leucine-rich repeats and WD repeat domain containing 1.	0.720
ENSAPOP00000024610	ENSAPOP00000028898	ENSAPOP00000024610	ENSAPOP00000028898	Uncharacterized protein.	Uncharacterized protein.	0.943
ENSAPOP00000024610	lrwd1	ENSAPOP00000024610	ENSAPOP00000001467	Uncharacterized protein.	Leucine-rich repeats and WD repeat domain containing 1.	0.772
ENSAPOP00000028898	ENSAPOP00000024610	ENSAPOP00000028898	ENSAPOP00000024610	Uncharacterized protein.	Uncharacterized protein.	0.943
ENSAPOP00000028898	lrwd1	ENSAPOP00000028898	ENSAPOP00000001467	Uncharacterized protein.	Leucine-rich repeats and WD repeat domain containing 1.	0.772
LOC110956535	ENSAPOP00000006666	ENSAPOP00000020537	ENSAPOP00000006666	Von Willebrand factor A domain containing 5B2.	Uncharacterized protein.	0.736
LOC110956535	lrwd1	ENSAPOP00000020537	ENSAPOP00000001467	Von Willebrand factor A domain containing 5B2.	Leucine-rich repeats and WD repeat domain containing 1.	0.744
cul1	lrwd1	ENSAPOP00000000646	ENSAPOP00000001467	Cullin 1b; Belongs to the cullin family.	Leucine-rich repeats and WD repeat domain containing 1.	0.805
cul1	orc3	ENSAPOP00000000646	ENSAPOP00000011016	Cullin 1b; Belongs to the cullin family.	Origin recognition complex, subunit 3.	0.434
cul1	skp2	ENSAPOP00000000646	ENSAPOP00000015653	Cullin 1b; Belongs to the cullin family.	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.	0.999
lrwd1	ENSAPOP00000006666	ENSAPOP00000001467	ENSAPOP00000006666	Leucine-rich repeats and WD repeat domain containing 1.	Uncharacterized protein.	0.720
lrwd1	ENSAPOP00000024610	ENSAPOP00000001467	ENSAPOP00000024610	Leucine-rich repeats and WD repeat domain containing 1.	Uncharacterized protein.	0.772
lrwd1	ENSAPOP00000028898	ENSAPOP00000001467	ENSAPOP00000028898	Leucine-rich repeats and WD repeat domain containing 1.	Uncharacterized protein.	0.772
lrwd1	LOC110956535	ENSAPOP00000001467	ENSAPOP00000020537	Leucine-rich repeats and WD repeat domain containing 1.	Von Willebrand factor A domain containing 5B2.	0.744
lrwd1	cul1	ENSAPOP00000001467	ENSAPOP00000000646	Leucine-rich repeats and WD repeat domain containing 1.	Cullin 1b; Belongs to the cullin family.	0.805
lrwd1	orc2	ENSAPOP00000001467	ENSAPOP00000008091	Leucine-rich repeats and WD repeat domain containing 1.	Origin recognition complex, subunit 2.	0.993
lrwd1	orc3	ENSAPOP00000001467	ENSAPOP00000011016	Leucine-rich repeats and WD repeat domain containing 1.	Origin recognition complex, subunit 3.	0.995
lrwd1	orc4	ENSAPOP00000001467	ENSAPOP00000013580	Leucine-rich repeats and WD repeat domain containing 1.	Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family.	0.995
lrwd1	orc5	ENSAPOP00000001467	ENSAPOP00000001148	Leucine-rich repeats and WD repeat domain containing 1.	Origin recognition complex, subunit 5.	0.995