LOC110952318 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110952318

Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family. (264 aa)

Predicted Functional Partners:

LOC110964690

0.994

LOC110945380

0.993

ENSAPOP00000030139

0.956

ENSAPOP00000031514

0.956

LOC110951962

0.924

LOC110951689

0.914

fau

0.912

lum

0.907

ENSAPOP00000020227

0.907

LOC110963115

0.907

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000020227	ENSAPOP00000030139	ENSAPOP00000020227	ENSAPOP00000030139	Uncharacterized protein; Belongs to the peptidase C14A family.	DED domain-containing protein.	0.975
ENSAPOP00000020227	ENSAPOP00000031514	ENSAPOP00000020227	ENSAPOP00000031514	Uncharacterized protein; Belongs to the peptidase C14A family.	Death domain-containing protein.	0.975
ENSAPOP00000020227	LOC110945380	ENSAPOP00000020227	ENSAPOP00000006463	Uncharacterized protein; Belongs to the peptidase C14A family.	Death domain-containing protein.	0.962
ENSAPOP00000020227	LOC110951962	ENSAPOP00000020227	ENSAPOP00000017778	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.819
ENSAPOP00000020227	LOC110952318	ENSAPOP00000020227	ENSAPOP00000001495	Uncharacterized protein; Belongs to the peptidase C14A family.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.907
ENSAPOP00000030139	ENSAPOP00000020227	ENSAPOP00000030139	ENSAPOP00000020227	DED domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.975
ENSAPOP00000030139	LOC110945380	ENSAPOP00000030139	ENSAPOP00000006463	DED domain-containing protein.	Death domain-containing protein.	0.992
ENSAPOP00000030139	LOC110951962	ENSAPOP00000030139	ENSAPOP00000017778	DED domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.982
ENSAPOP00000030139	LOC110952318	ENSAPOP00000030139	ENSAPOP00000001495	DED domain-containing protein.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.956
ENSAPOP00000030139	LOC110963115	ENSAPOP00000030139	ENSAPOP00000032126	DED domain-containing protein.	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.975
ENSAPOP00000030139	fau	ENSAPOP00000030139	ENSAPOP00000005856	DED domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.500
ENSAPOP00000031514	ENSAPOP00000020227	ENSAPOP00000031514	ENSAPOP00000020227	Death domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.975
ENSAPOP00000031514	LOC110945380	ENSAPOP00000031514	ENSAPOP00000006463	Death domain-containing protein.	Death domain-containing protein.	0.992
ENSAPOP00000031514	LOC110951962	ENSAPOP00000031514	ENSAPOP00000017778	Death domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.982
ENSAPOP00000031514	LOC110952318	ENSAPOP00000031514	ENSAPOP00000001495	Death domain-containing protein.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.956
ENSAPOP00000031514	LOC110963115	ENSAPOP00000031514	ENSAPOP00000032126	Death domain-containing protein.	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.975
ENSAPOP00000031514	fau	ENSAPOP00000031514	ENSAPOP00000005856	Death domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.500
LOC110945380	ENSAPOP00000020227	ENSAPOP00000006463	ENSAPOP00000020227	Death domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.962
LOC110945380	ENSAPOP00000030139	ENSAPOP00000006463	ENSAPOP00000030139	Death domain-containing protein.	DED domain-containing protein.	0.992
LOC110945380	ENSAPOP00000031514	ENSAPOP00000006463	ENSAPOP00000031514	Death domain-containing protein.	Death domain-containing protein.	0.992