SLC6A13 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SLC6A13

Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (611 aa)

Predicted Functional Partners:

mecp2

0.885

irak1

0.885

gad2

0.668

LOC110950387

0.659

tnpo3

0.654

slc12a1

0.654

gabbr2

0.652

gnl3l

0.649

camk2b

0.637

CACNA1D

0.632

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CACNA1D	LOC110950387	ENSAPOP00000008282	ENSAPOP00000026933	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Uncharacterized protein.	0.618
CACNA1D	SLC6A13	ENSAPOP00000008282	ENSAPOP00000001530	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.632
CACNA1D	camk2b	ENSAPOP00000008282	ENSAPOP00000014443	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.	0.899
LOC110950387	CACNA1D	ENSAPOP00000026933	ENSAPOP00000008282	Uncharacterized protein.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.618
LOC110950387	SLC6A13	ENSAPOP00000026933	ENSAPOP00000001530	Uncharacterized protein.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.659
LOC110950387	camk2b	ENSAPOP00000026933	ENSAPOP00000014443	Uncharacterized protein.	Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.	0.663
SLC6A13	CACNA1D	ENSAPOP00000001530	ENSAPOP00000008282	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.632
SLC6A13	LOC110950387	ENSAPOP00000001530	ENSAPOP00000026933	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Uncharacterized protein.	0.659
SLC6A13	camk2b	ENSAPOP00000001530	ENSAPOP00000014443	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.	0.637
SLC6A13	gabbr2	ENSAPOP00000001530	ENSAPOP00000021221	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Gamma-aminobutyric acid (GABA) B receptor, 2.	0.652
SLC6A13	gad2	ENSAPOP00000001530	ENSAPOP00000033657	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Glutamate decarboxylase 2.	0.668
SLC6A13	gnl3l	ENSAPOP00000001530	ENSAPOP00000010179	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.649
SLC6A13	irak1	ENSAPOP00000001530	ENSAPOP00000001403	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Protein kinase domain-containing protein.	0.885
SLC6A13	mecp2	ENSAPOP00000001530	ENSAPOP00000001343	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Methyl CpG binding protein 2.	0.885
SLC6A13	slc12a1	ENSAPOP00000001530	ENSAPOP00000029304	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Solute carrier family 12 member 1.	0.654
SLC6A13	tnpo3	ENSAPOP00000001530	ENSAPOP00000015296	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Transportin 3.	0.654
camk2b	CACNA1D	ENSAPOP00000014443	ENSAPOP00000008282	Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.899
camk2b	LOC110950387	ENSAPOP00000014443	ENSAPOP00000026933	Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.	Uncharacterized protein.	0.663
camk2b	SLC6A13	ENSAPOP00000014443	ENSAPOP00000001530	Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.637
gabbr2	SLC6A13	ENSAPOP00000021221	ENSAPOP00000001530	Gamma-aminobutyric acid (GABA) B receptor, 2.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.652