Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)    
Predicted Functional Partners:
rpl18a
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
   
 
 0.999
ENSAPOP00000000342
Ribosomal_S3_C domain-containing protein.
  
 0.999
RPS20
Ribosomal protein S20.
  
 0.999
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 
 0.999
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 
 0.999
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 
 0.999
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.999
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.999
rpl6
Ribosomal protein L6.
  
 
 0.999
rps4x
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
  
 0.999
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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