Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000001627Rhotekin 2b. (326 aa)    
Predicted Functional Partners:
c1qbp
Complement component 1, q subcomponent binding protein.
     
 0.500
lin7c
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
     
  0.488
lin7a
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
     
  0.488
ENSAPOP00000032840
Lin-7 homolog B (C. elegans).
     
  0.488
rhobtb3
Si:dkey-6b12.5.
    
  0.473
RND1
Rho family GTPase 1.
    
  0.473
LOC110959317
Rho family GTPase 2.
    
  0.473
LOC110958078
Ras homolog family member Ca.
    
  0.473
LOC110958602
Rho family GTPase 1b.
    
  0.473
ENSAPOP00000005758
Ras homolog gene family, member Gd.
    
  0.473
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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