Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
LOC110953580PPM-type phosphatase domain-containing protein. (528 aa)    
Predicted Functional Partners:
rab29
Uncharacterized protein.
    
 
 0.655
acbd3
Acyl-Coenzyme A binding domain containing 3.
    
 
 0.604
frmpd3
FERM and PDZ domain containing 3.
      
 0.550
rilpl2
Rab interacting lysosomal protein-like 2.
      
 0.546
rab35
RAB35, member RAS oncogene family b.
    
 
 0.529
LOC110955130
Si:dkey-16l2.16.
    
 
 0.529
osgin2
Oxidative stress induced growth inhibitor family member 2.
      
 0.468
LOC110964874
Putative pyruvate dehydrogenase phosphatase isoenzyme 2.
      
 0.466
dolpp1
Dolichyldiphosphatase 1.
      
 0.422
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
      
 0.418
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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