STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110965947DUF3421 domain-containing protein. (396 aa)    
Predicted Functional Partners:
chtf18
AAA domain-containing protein.
    
   0.677
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.619
synj1
Synaptojanin 1.
   
 
 0.551
ENSAPOP00000007183
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
 0.504
birc6
Baculoviral IAP repeat containing 6.
   
 
 0.504
gak
Cyclin G associated kinase.
    
 
 0.486
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.469
YBX2
Y-box binding protein 2.
   
 
 0.466
LOC110948018
Lin-28 homolog B (C. elegans).
   
 
 0.466
ENSAPOP00000011727
Lin-28 homolog A (C. elegans).
   
 
 0.466
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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