STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110965947DUF3421 domain-containing protein. (396 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 
 0.558
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.510
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.499
synj1
Synaptojanin 1.
    
 
 0.484
kiaa1109
Si:ch211-233a24.2.
   
 
 0.452
YBX2
Y-box binding protein 2.
    
 
 0.409
LOC110948018
Lin-28 homolog B (C. elegans).
    
 
 0.409
ENSAPOP00000011727
Lin-28 homolog A (C. elegans).
    
 
 0.409
carhsp1
Calcium regulated heat stable protein 1.
    
 
 0.409
LOC110969807
Cold shock domain containing C2, RNA binding a.
    
 
 0.409
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.