STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpc4apTransient receptor potential cation channel, subfamily C, member 4 associated protein a. (774 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.989
dcaf4
WD repeat domain 21.
   
 
 0.924
cul4b
Cullin 4B; Belongs to the cullin family.
    
 0.906
LOC110971589
DET1 and DDB1 associated 1.
    
  0.902
DDA1
DET1 and DDB1 associated 1.
    
  0.902
dcaf6
Ddb1 and cul4 associated factor 6.
    
 0.875
LOC110949440
Cullin 4A; Belongs to the cullin family.
    
 
 0.859
LOC110965726
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.846
dcaf5
Ddb1 and cul4 associated factor 5.
     
 0.820
dcaf8
DDB1 and CUL4 associated factor 8.
    
 0.811
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.