Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110949969Orthopedia homeobox b. (311 aa)    
Predicted Functional Partners:
ALX3
ALX homeobox 3.
   
  
 0.874
arx
Aristaless related homeobox a.
   
  
 0.844
LOC110962950
Unc4.1 homeobox (C. elegans).
   
  
 0.811
uncx
UNC homeobox.
   
  
 0.811
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.690
xpc
Xeroderma pigmentosum, complementation group C.
    
 
 0.673
adsl
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.639
prrx1
Paired related homeobox 1a.
   
    0.580
LOC110952233
BHLH domain-containing protein.
   
 0.578
srf
MADS-box domain-containing protein.
    
 0.570
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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