Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110964127Cryptochrome circadian regulator 1a. (629 aa)    
Predicted Functional Partners:
rorb
RAR-related orphan receptor B.
    
 0.969
per1
Period circadian clock 1b.
   
 0.951
CLOCK
Clock circadian regulator a.
    
 0.937
LOC110964232
Clock circadian regulator b.
    
 0.937
ENSAPOP00000002624
Uncharacterized protein.
   
 0.930
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.930
LOC110967463
Neuronal PAS domain protein 2.
    
 0.924
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.914
LOC110955530
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.914
LOC110950458
PAS domain-containing protein.
   
 0.913
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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