LOC110953574 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110953574

BAH domain and coiled-coil containing 1b. (2659 aa)

Predicted Functional Partners:

sap30l

0.899

SINHCAF

0.897

LOC110961345

0.897

ctu1

0.859

LOC110956824

0.824

ing1

0.815

rbbp4

0.744

LOC110968098

0.744

LOC110945738

0.744

RBBP4

0.744

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110945738	LOC110953574	ENSAPOP00000012954	ENSAPOP00000001774	CAF1C_H4-bd domain-containing protein.	BAH domain and coiled-coil containing 1b.	0.744
LOC110945738	LOC110956824	ENSAPOP00000012954	ENSAPOP00000011448	CAF1C_H4-bd domain-containing protein.	SIN3-HDAC complex associated factor, like.	0.587
LOC110945738	LOC110961345	ENSAPOP00000012954	ENSAPOP00000016708	CAF1C_H4-bd domain-containing protein.	Uncharacterized protein.	0.738
LOC110945738	RBBP4	ENSAPOP00000012954	ENSAPOP00000032569	CAF1C_H4-bd domain-containing protein.	RB binding protein 4, chromatin remodeling factor.	0.833
LOC110945738	SINHCAF	ENSAPOP00000012954	ENSAPOP00000003004	CAF1C_H4-bd domain-containing protein.	SIN3-HDAC complex associated factor.	0.738
LOC110945738	ing1	ENSAPOP00000012954	ENSAPOP00000021686	CAF1C_H4-bd domain-containing protein.	Inhibitor of growth protein.	0.888
LOC110945738	rbbp4	ENSAPOP00000012954	ENSAPOP00000008785	CAF1C_H4-bd domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.833
LOC110945738	sap30l	ENSAPOP00000012954	ENSAPOP00000034267	CAF1C_H4-bd domain-containing protein.	Sap30-like.	0.933
LOC110953574	LOC110945738	ENSAPOP00000001774	ENSAPOP00000012954	BAH domain and coiled-coil containing 1b.	CAF1C_H4-bd domain-containing protein.	0.744
LOC110953574	LOC110956824	ENSAPOP00000001774	ENSAPOP00000011448	BAH domain and coiled-coil containing 1b.	SIN3-HDAC complex associated factor, like.	0.824
LOC110953574	LOC110961345	ENSAPOP00000001774	ENSAPOP00000016708	BAH domain and coiled-coil containing 1b.	Uncharacterized protein.	0.897
LOC110953574	LOC110968098	ENSAPOP00000001774	ENSAPOP00000009428	BAH domain and coiled-coil containing 1b.	WD_REPEATS_REGION domain-containing protein.	0.744
LOC110953574	RBBP4	ENSAPOP00000001774	ENSAPOP00000032569	BAH domain and coiled-coil containing 1b.	RB binding protein 4, chromatin remodeling factor.	0.744
LOC110953574	SINHCAF	ENSAPOP00000001774	ENSAPOP00000003004	BAH domain and coiled-coil containing 1b.	SIN3-HDAC complex associated factor.	0.897
LOC110953574	ctu1	ENSAPOP00000001774	ENSAPOP00000034533	BAH domain and coiled-coil containing 1b.	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	0.859
LOC110953574	ing1	ENSAPOP00000001774	ENSAPOP00000021686	BAH domain and coiled-coil containing 1b.	Inhibitor of growth protein.	0.815
LOC110953574	rbbp4	ENSAPOP00000001774	ENSAPOP00000008785	BAH domain and coiled-coil containing 1b.	WD_REPEATS_REGION domain-containing protein.	0.744
LOC110953574	sap30l	ENSAPOP00000001774	ENSAPOP00000034267	BAH domain and coiled-coil containing 1b.	Sap30-like.	0.899
LOC110956824	LOC110945738	ENSAPOP00000011448	ENSAPOP00000012954	SIN3-HDAC complex associated factor, like.	CAF1C_H4-bd domain-containing protein.	0.587
LOC110956824	LOC110953574	ENSAPOP00000011448	ENSAPOP00000001774	SIN3-HDAC complex associated factor, like.	BAH domain and coiled-coil containing 1b.	0.824