bcl9 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bcl9

BCL9 transcription coactivator. (1493 aa)

Predicted Functional Partners:

UNC79

0.775

LOC110964394

0.679

ENSAPOP00000016008

0.670

RIMS2

0.670

LOC110949074

0.653

tcf7l2

0.653

LOC110953630

0.653

ENSAPOP00000019455

0.653

lef1

0.653

ENSAPOP00000006159

0.627

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000006159	LOC110964394	ENSAPOP00000006159	ENSAPOP00000014286	Uncharacterized protein.	RAN binding protein 2.	0.469
ENSAPOP00000006159	bcl9	ENSAPOP00000006159	ENSAPOP00000001779	Uncharacterized protein.	BCL9 transcription coactivator.	0.627
ENSAPOP00000016008	RIMS2	ENSAPOP00000016008	ENSAPOP00000031587	PDZ domain-containing protein.	Regulating synaptic membrane exocytosis 2.	0.726
ENSAPOP00000016008	UNC79	ENSAPOP00000016008	ENSAPOP00000028605	PDZ domain-containing protein.	Unc-79 homolog, NALCN channel complex subunit.	0.826
ENSAPOP00000016008	bcl9	ENSAPOP00000016008	ENSAPOP00000001779	PDZ domain-containing protein.	BCL9 transcription coactivator.	0.670
ENSAPOP00000019455	LOC110949074	ENSAPOP00000019455	ENSAPOP00000016300	CTNNB1_binding domain-containing protein.	Transcription factor 7.	0.939
ENSAPOP00000019455	LOC110953630	ENSAPOP00000019455	ENSAPOP00000019426	CTNNB1_binding domain-containing protein.	Transcription factor 7 like 1b.	0.540
ENSAPOP00000019455	bcl9	ENSAPOP00000019455	ENSAPOP00000001779	CTNNB1_binding domain-containing protein.	BCL9 transcription coactivator.	0.653
ENSAPOP00000019455	lef1	ENSAPOP00000019455	ENSAPOP00000034353	CTNNB1_binding domain-containing protein.	Lymphoid enhancer-binding factor 1.	0.978
ENSAPOP00000019455	tcf7l2	ENSAPOP00000019455	ENSAPOP00000016529	CTNNB1_binding domain-containing protein.	Transcription factor 7 like 2.	0.936
LOC110949074	ENSAPOP00000019455	ENSAPOP00000016300	ENSAPOP00000019455	Transcription factor 7.	CTNNB1_binding domain-containing protein.	0.939
LOC110949074	LOC110953630	ENSAPOP00000016300	ENSAPOP00000019426	Transcription factor 7.	Transcription factor 7 like 1b.	0.939
LOC110949074	bcl9	ENSAPOP00000016300	ENSAPOP00000001779	Transcription factor 7.	BCL9 transcription coactivator.	0.653
LOC110949074	lef1	ENSAPOP00000016300	ENSAPOP00000034353	Transcription factor 7.	Lymphoid enhancer-binding factor 1.	0.985
LOC110949074	tcf7l2	ENSAPOP00000016300	ENSAPOP00000016529	Transcription factor 7.	Transcription factor 7 like 2.	0.942
LOC110953630	ENSAPOP00000019455	ENSAPOP00000019426	ENSAPOP00000019455	Transcription factor 7 like 1b.	CTNNB1_binding domain-containing protein.	0.540
LOC110953630	LOC110949074	ENSAPOP00000019426	ENSAPOP00000016300	Transcription factor 7 like 1b.	Transcription factor 7.	0.939
LOC110953630	bcl9	ENSAPOP00000019426	ENSAPOP00000001779	Transcription factor 7 like 1b.	BCL9 transcription coactivator.	0.653
LOC110953630	lef1	ENSAPOP00000019426	ENSAPOP00000034353	Transcription factor 7 like 1b.	Lymphoid enhancer-binding factor 1.	0.978
LOC110953630	tcf7l2	ENSAPOP00000019426	ENSAPOP00000016529	Transcription factor 7 like 1b.	Transcription factor 7 like 2.	0.935