sbno1 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sbno1

Strawberry notch homolog 1 (Drosophila). (1165 aa)

Predicted Functional Partners:

LOC110954260

0.891

cdk2ap2

0.840

CDK2AP1

0.830

LOC110957650

0.601

ENSAPOP00000002920

0.597

nol8

0.488

HDAC3

0.476

sox5

0.467

dyrk2

0.455

LOC110953342

0.455

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK2AP1	HDAC3	ENSAPOP00000001860	ENSAPOP00000010132	Cyclin dependent kinase 2 associated protein 1.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.600
CDK2AP1	LOC110954260	ENSAPOP00000001860	ENSAPOP00000032556	Cyclin dependent kinase 2 associated protein 1.	Uncharacterized protein.	0.815
CDK2AP1	cdk2ap2	ENSAPOP00000001860	ENSAPOP00000026805	Cyclin dependent kinase 2 associated protein 1.	Cyclin-dependent kinase 2-associated protein; Belongs to the CDK2AP family.	0.873
CDK2AP1	sbno1	ENSAPOP00000001860	ENSAPOP00000001782	Cyclin dependent kinase 2 associated protein 1.	Strawberry notch homolog 1 (Drosophila).	0.830
ENSAPOP00000002920	LOC110954260	ENSAPOP00000002920	ENSAPOP00000032556	Vestigial-like family member 2a.	Uncharacterized protein.	0.597
ENSAPOP00000002920	sbno1	ENSAPOP00000002920	ENSAPOP00000001782	Vestigial-like family member 2a.	Strawberry notch homolog 1 (Drosophila).	0.597
HDAC3	CDK2AP1	ENSAPOP00000010132	ENSAPOP00000001860	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Cyclin dependent kinase 2 associated protein 1.	0.600
HDAC3	LOC110953342	ENSAPOP00000010132	ENSAPOP00000008714	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Dual specificity tyrosine phosphorylation regulated kinase 3.	0.581
HDAC3	LOC110954260	ENSAPOP00000010132	ENSAPOP00000032556	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.476
HDAC3	cdk2ap2	ENSAPOP00000010132	ENSAPOP00000026805	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Cyclin-dependent kinase 2-associated protein; Belongs to the CDK2AP family.	0.600
HDAC3	dyrk2	ENSAPOP00000010132	ENSAPOP00000006232	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2.	0.581
HDAC3	sbno1	ENSAPOP00000010132	ENSAPOP00000001782	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Strawberry notch homolog 1 (Drosophila).	0.476
LOC110953342	HDAC3	ENSAPOP00000008714	ENSAPOP00000010132	Dual specificity tyrosine phosphorylation regulated kinase 3.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.581
LOC110953342	LOC110954260	ENSAPOP00000008714	ENSAPOP00000032556	Dual specificity tyrosine phosphorylation regulated kinase 3.	Uncharacterized protein.	0.455
LOC110953342	sbno1	ENSAPOP00000008714	ENSAPOP00000001782	Dual specificity tyrosine phosphorylation regulated kinase 3.	Strawberry notch homolog 1 (Drosophila).	0.455
LOC110954260	CDK2AP1	ENSAPOP00000032556	ENSAPOP00000001860	Uncharacterized protein.	Cyclin dependent kinase 2 associated protein 1.	0.815
LOC110954260	ENSAPOP00000002920	ENSAPOP00000032556	ENSAPOP00000002920	Uncharacterized protein.	Vestigial-like family member 2a.	0.597
LOC110954260	HDAC3	ENSAPOP00000032556	ENSAPOP00000010132	Uncharacterized protein.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.476
LOC110954260	LOC110953342	ENSAPOP00000032556	ENSAPOP00000008714	Uncharacterized protein.	Dual specificity tyrosine phosphorylation regulated kinase 3.	0.455
LOC110954260	LOC110957650	ENSAPOP00000032556	ENSAPOP00000021255	Uncharacterized protein.	Interleukin 22 receptor, alpha 2.	0.601