ankrd13b protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ankrd13b

Ankyrin repeat domain 13B. (646 aa)

Predicted Functional Partners:

tmem25

0.647

csnk1a1

0.567

qdpr

0.562

mmab

0.491

cunh12orf43

0.471

pick1

0.429

ENSAPOP00000026153

0.427

LOC110950853

0.427

gpha2

0.426

ppp2r5b

0.423

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000026153	ankrd13b	ENSAPOP00000026153	ENSAPOP00000001828	Si:ch73-71c20.5.	Ankyrin repeat domain 13B.	0.427
ENSAPOP00000026153	qdpr	ENSAPOP00000026153	ENSAPOP00000033972	Si:ch73-71c20.5.	Quinoid dihydropteridine reductase a.	0.529
ENSAPOP00000026153	tmem25	ENSAPOP00000026153	ENSAPOP00000012797	Si:ch73-71c20.5.	Ig-like domain-containing protein.	0.647
LOC110950853	ankrd13b	ENSAPOP00000031675	ENSAPOP00000001828	PNKD metallo-beta-lactamase domain containing.	Ankyrin repeat domain 13B.	0.427
LOC110950853	qdpr	ENSAPOP00000031675	ENSAPOP00000033972	PNKD metallo-beta-lactamase domain containing.	Quinoid dihydropteridine reductase a.	0.529
LOC110950853	tmem25	ENSAPOP00000031675	ENSAPOP00000012797	PNKD metallo-beta-lactamase domain containing.	Ig-like domain-containing protein.	0.647
ankrd13b	ENSAPOP00000026153	ENSAPOP00000001828	ENSAPOP00000026153	Ankyrin repeat domain 13B.	Si:ch73-71c20.5.	0.427
ankrd13b	LOC110950853	ENSAPOP00000001828	ENSAPOP00000031675	Ankyrin repeat domain 13B.	PNKD metallo-beta-lactamase domain containing.	0.427
ankrd13b	csnk1a1	ENSAPOP00000001828	ENSAPOP00000008669	Ankyrin repeat domain 13B.	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	0.567
ankrd13b	cunh12orf43	ENSAPOP00000001828	ENSAPOP00000034358	Ankyrin repeat domain 13B.	Zgc:162025.	0.471
ankrd13b	gpha2	ENSAPOP00000001828	ENSAPOP00000007087	Ankyrin repeat domain 13B.	Glycoprotein hormones alpha chain; Belongs to the glycoprotein hormones subunit alpha family.	0.426
ankrd13b	mmab	ENSAPOP00000001828	ENSAPOP00000025383	Ankyrin repeat domain 13B.	Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.	0.491
ankrd13b	pick1	ENSAPOP00000001828	ENSAPOP00000008362	Ankyrin repeat domain 13B.	Protein interacting with prkca 1.	0.429
ankrd13b	ppp2r5b	ENSAPOP00000001828	ENSAPOP00000007006	Ankyrin repeat domain 13B.	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.	0.423
ankrd13b	qdpr	ENSAPOP00000001828	ENSAPOP00000033972	Ankyrin repeat domain 13B.	Quinoid dihydropteridine reductase a.	0.562
ankrd13b	tmem25	ENSAPOP00000001828	ENSAPOP00000012797	Ankyrin repeat domain 13B.	Ig-like domain-containing protein.	0.647
csnk1a1	ankrd13b	ENSAPOP00000008669	ENSAPOP00000001828	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	Ankyrin repeat domain 13B.	0.567
csnk1a1	ppp2r5b	ENSAPOP00000008669	ENSAPOP00000007006	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.	0.649
cunh12orf43	ankrd13b	ENSAPOP00000034358	ENSAPOP00000001828	Zgc:162025.	Ankyrin repeat domain 13B.	0.471
cunh12orf43	gpha2	ENSAPOP00000034358	ENSAPOP00000007087	Zgc:162025.	Glycoprotein hormones alpha chain; Belongs to the glycoprotein hormones subunit alpha family.	0.494