LOC110955267 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110955267

Calcium channel, voltage-dependent, alpha 2/delta subunit 2b. (1054 aa)

Predicted Functional Partners:

LOC110963487

0.877

cacng1

0.877

ENSAPOP00000025798

0.815

LOC110964154

0.814

LOC110949972

0.814

LOC110949073

0.814

LOC110966887

0.813

LOC110955006

0.810

cacnb1

0.792

LOC110956136

0.792

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000025798	LOC110949073	ENSAPOP00000025798	ENSAPOP00000031936	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Serine/threonine-protein phosphatase.	0.418
ENSAPOP00000025798	LOC110949972	ENSAPOP00000025798	ENSAPOP00000021990	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Ras protein-specific guanine nucleotide-releasing factor 2b.	0.694
ENSAPOP00000025798	LOC110955006	ENSAPOP00000025798	ENSAPOP00000028614	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Ras protein-specific guanine nucleotide-releasing factor 2a.	0.694
ENSAPOP00000025798	LOC110955267	ENSAPOP00000025798	ENSAPOP00000001871	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Calcium channel, voltage-dependent, alpha 2/delta subunit 2b.	0.815
ENSAPOP00000025798	LOC110956136	ENSAPOP00000025798	ENSAPOP00000011943	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Calcium channel, voltage-dependent, beta 4a subunit.	0.814
ENSAPOP00000025798	LOC110964154	ENSAPOP00000025798	ENSAPOP00000021557	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Serine/threonine-protein phosphatase.	0.418
ENSAPOP00000025798	LOC110966887	ENSAPOP00000025798	ENSAPOP00000027307	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Serine/threonine-protein phosphatase.	0.418
ENSAPOP00000025798	cacnb1	ENSAPOP00000025798	ENSAPOP00000004264	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	Calcium channel, voltage-dependent, beta 1 subunit.	0.821
LOC110949073	ENSAPOP00000025798	ENSAPOP00000031936	ENSAPOP00000025798	Serine/threonine-protein phosphatase.	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	0.418
LOC110949073	LOC110955267	ENSAPOP00000031936	ENSAPOP00000001871	Serine/threonine-protein phosphatase.	Calcium channel, voltage-dependent, alpha 2/delta subunit 2b.	0.814
LOC110949073	LOC110956136	ENSAPOP00000031936	ENSAPOP00000011943	Serine/threonine-protein phosphatase.	Calcium channel, voltage-dependent, beta 4a subunit.	0.832
LOC110949073	LOC110964154	ENSAPOP00000031936	ENSAPOP00000021557	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.893
LOC110949073	LOC110966887	ENSAPOP00000031936	ENSAPOP00000027307	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.893
LOC110949073	cacnb1	ENSAPOP00000031936	ENSAPOP00000004264	Serine/threonine-protein phosphatase.	Calcium channel, voltage-dependent, beta 1 subunit.	0.839
LOC110949972	ENSAPOP00000025798	ENSAPOP00000021990	ENSAPOP00000025798	Ras protein-specific guanine nucleotide-releasing factor 2b.	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	0.694
LOC110949972	LOC110955006	ENSAPOP00000021990	ENSAPOP00000028614	Ras protein-specific guanine nucleotide-releasing factor 2b.	Ras protein-specific guanine nucleotide-releasing factor 2a.	0.819
LOC110949972	LOC110955267	ENSAPOP00000021990	ENSAPOP00000001871	Ras protein-specific guanine nucleotide-releasing factor 2b.	Calcium channel, voltage-dependent, alpha 2/delta subunit 2b.	0.814
LOC110949972	LOC110963487	ENSAPOP00000021990	ENSAPOP00000004994	Ras protein-specific guanine nucleotide-releasing factor 2b.	Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.	0.822
LOC110949972	cacng1	ENSAPOP00000021990	ENSAPOP00000021205	Ras protein-specific guanine nucleotide-releasing factor 2b.	Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.	0.822
LOC110955006	ENSAPOP00000025798	ENSAPOP00000028614	ENSAPOP00000025798	Ras protein-specific guanine nucleotide-releasing factor 2a.	Protein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily.	0.694