LOC110953570 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC110953570

Uncharacterized protein. (167 aa)

Predicted Functional Partners:

smo

0.902

mosmo

0.865

tspan33

0.812

mgrn1

0.772

LOC110953760

0.694

plod2

0.638

ENSAPOP00000013770

0.638

LOC110972685

0.638

ogfod2

0.638

plod1

0.638

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000013770	LOC110953570	ENSAPOP00000013770	ENSAPOP00000001872	Uncharacterized protein.	Uncharacterized protein.	0.638
ENSAPOP00000013770	mosmo	ENSAPOP00000013770	ENSAPOP00000015086	Uncharacterized protein.	Uncharacterized protein.	0.638
ENSAPOP00000013770	plod2	ENSAPOP00000013770	ENSAPOP00000008815	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.	0.800
LOC110953570	ENSAPOP00000013770	ENSAPOP00000001872	ENSAPOP00000013770	Uncharacterized protein.	Uncharacterized protein.	0.638
LOC110953570	LOC110953760	ENSAPOP00000001872	ENSAPOP00000030290	Uncharacterized protein.	Tetraspanin.	0.694
LOC110953570	LOC110972685	ENSAPOP00000001872	ENSAPOP00000014157	Uncharacterized protein.	Uncharacterized protein.	0.638
LOC110953570	mgrn1	ENSAPOP00000001872	ENSAPOP00000031692	Uncharacterized protein.	Mahogunin, ring finger 1b.	0.772
LOC110953570	mosmo	ENSAPOP00000001872	ENSAPOP00000015086	Uncharacterized protein.	Uncharacterized protein.	0.865
LOC110953570	ogfod2	ENSAPOP00000001872	ENSAPOP00000015729	Uncharacterized protein.	2-oxoglutarate and iron-dependent oxygenase domain containing 2.	0.638
LOC110953570	plod1	ENSAPOP00000001872	ENSAPOP00000028050	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	0.638
LOC110953570	plod2	ENSAPOP00000001872	ENSAPOP00000008815	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.	0.638
LOC110953570	smo	ENSAPOP00000001872	ENSAPOP00000007349	Uncharacterized protein.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.902
LOC110953570	tspan33	ENSAPOP00000001872	ENSAPOP00000007398	Uncharacterized protein.	Tetraspanin.	0.812
LOC110953760	LOC110953570	ENSAPOP00000030290	ENSAPOP00000001872	Tetraspanin.	Uncharacterized protein.	0.694
LOC110953760	mgrn1	ENSAPOP00000030290	ENSAPOP00000031692	Tetraspanin.	Mahogunin, ring finger 1b.	0.716
LOC110953760	mosmo	ENSAPOP00000030290	ENSAPOP00000015086	Tetraspanin.	Uncharacterized protein.	0.694
LOC110972685	LOC110953570	ENSAPOP00000014157	ENSAPOP00000001872	Uncharacterized protein.	Uncharacterized protein.	0.638
LOC110972685	mosmo	ENSAPOP00000014157	ENSAPOP00000015086	Uncharacterized protein.	Uncharacterized protein.	0.638
LOC110972685	plod2	ENSAPOP00000014157	ENSAPOP00000008815	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.	0.800
mgrn1	LOC110953570	ENSAPOP00000031692	ENSAPOP00000001872	Mahogunin, ring finger 1b.	Uncharacterized protein.	0.772