cchcr1 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cchcr1

Si:dkeyp-20g2.1. (865 aa)

Predicted Functional Partners:

ENSAPOP00000003760

0.571

ska1

0.540

kansl2

0.512

srm

0.504

star

0.491

pawr

0.485

LOC110966381

0.485

LOC110955071

0.477

hook1

0.463

LOC110952464

0.442

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000003760	LOC110955071	ENSAPOP00000003760	ENSAPOP00000008530	Transcription factor 19 (SC1), like.	Inhibitor of DNA binding 1, HLH protein.	0.400
ENSAPOP00000003760	cchcr1	ENSAPOP00000003760	ENSAPOP00000001878	Transcription factor 19 (SC1), like.	Si:dkeyp-20g2.1.	0.571
LOC110952464	cchcr1	ENSAPOP00000034526	ENSAPOP00000001878	Uncharacterized protein.	Si:dkeyp-20g2.1.	0.442
LOC110955071	ENSAPOP00000003760	ENSAPOP00000008530	ENSAPOP00000003760	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 19 (SC1), like.	0.400
LOC110955071	LOC110966381	ENSAPOP00000008530	ENSAPOP00000006093	Inhibitor of DNA binding 1, HLH protein.	POU domain protein.	0.434
LOC110955071	cchcr1	ENSAPOP00000008530	ENSAPOP00000001878	Inhibitor of DNA binding 1, HLH protein.	Si:dkeyp-20g2.1.	0.477
LOC110966381	LOC110955071	ENSAPOP00000006093	ENSAPOP00000008530	POU domain protein.	Inhibitor of DNA binding 1, HLH protein.	0.434
LOC110966381	cchcr1	ENSAPOP00000006093	ENSAPOP00000001878	POU domain protein.	Si:dkeyp-20g2.1.	0.485
cchcr1	ENSAPOP00000003760	ENSAPOP00000001878	ENSAPOP00000003760	Si:dkeyp-20g2.1.	Transcription factor 19 (SC1), like.	0.571
cchcr1	LOC110952464	ENSAPOP00000001878	ENSAPOP00000034526	Si:dkeyp-20g2.1.	Uncharacterized protein.	0.442
cchcr1	LOC110955071	ENSAPOP00000001878	ENSAPOP00000008530	Si:dkeyp-20g2.1.	Inhibitor of DNA binding 1, HLH protein.	0.477
cchcr1	LOC110966381	ENSAPOP00000001878	ENSAPOP00000006093	Si:dkeyp-20g2.1.	POU domain protein.	0.485
cchcr1	hook1	ENSAPOP00000001878	ENSAPOP00000022375	Si:dkeyp-20g2.1.	Hook microtubule-tethering protein 1.	0.463
cchcr1	kansl2	ENSAPOP00000001878	ENSAPOP00000005622	Si:dkeyp-20g2.1.	KAT8 regulatory NSL complex subunit 2.	0.512
cchcr1	pawr	ENSAPOP00000001878	ENSAPOP00000005011	Si:dkeyp-20g2.1.	PRKC, apoptosis, WT1, regulator.	0.485
cchcr1	ska1	ENSAPOP00000001878	ENSAPOP00000026290	Si:dkeyp-20g2.1.	Spindle and kinetochore associated complex subunit 1.	0.540
cchcr1	srm	ENSAPOP00000001878	ENSAPOP00000028150	Si:dkeyp-20g2.1.	Spermidine synthase; Belongs to the spermidine/spermine synthase family.	0.504
cchcr1	star	ENSAPOP00000001878	ENSAPOP00000008702	Si:dkeyp-20g2.1.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.491
hook1	cchcr1	ENSAPOP00000022375	ENSAPOP00000001878	Hook microtubule-tethering protein 1.	Si:dkeyp-20g2.1.	0.463
kansl2	cchcr1	ENSAPOP00000005622	ENSAPOP00000001878	KAT8 regulatory NSL complex subunit 2.	Si:dkeyp-20g2.1.	0.512