Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110967648PH domain-containing protein. (188 aa)    
Predicted Functional Partners:
chga
Chromogranin A.
   
    0.983
LOC110955386
Si:dkey-191g9.5.
    
   0.775
RAP1GDS1
Rap1 GTPase-GDP dissociation stimulator 1.
    
   0.775
bola1
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.677
WDR25
WD repeat domain 25.
      
 0.623
bricd5
BRICHOS domain containing 5.
      
 0.543
LOC110954781
Calsyntenin 3.
      
 0.535
mxd3
MAX dimerization protein 3.
      
 0.517
fgf3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.508
heca
Hdc homolog, cell cycle regulator.
      
 0.500
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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