LOC110961815 protein (Acanthochromis polyacanthus)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC110961815

Glutamate receptor, metabotropic 5a. (1210 aa)

Predicted Functional Partners:

LOC110963080

0.979

LOC110950711

0.925

ENSAPOP00000026860

0.925

LOC110950870

0.895

LOC110950863

0.890

ncdn

0.884

HOMER2

0.882

HOMER1

0.882

LOC110956829

0.880

GNAZ

0.879

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000026860	HOMER1	ENSAPOP00000026860	ENSAPOP00000005151	Homer scaffold protein 3b.	Homer scaffold protein 1.	0.880
ENSAPOP00000026860	HOMER2	ENSAPOP00000026860	ENSAPOP00000003340	Homer scaffold protein 3b.	Homer scaffold protein 2.	0.883
ENSAPOP00000026860	LOC110961815	ENSAPOP00000026860	ENSAPOP00000001906	Homer scaffold protein 3b.	Glutamate receptor, metabotropic 5a.	0.925
ENSAPOP00000026860	LOC110963080	ENSAPOP00000026860	ENSAPOP00000018412	Homer scaffold protein 3b.	Homer scaffold protein 1b.	0.987
ENSAPOP00000026860	ncdn	ENSAPOP00000026860	ENSAPOP00000029813	Homer scaffold protein 3b.	Neurochondrin.	0.505
GNAZ	LOC110950863	ENSAPOP00000010221	ENSAPOP00000018773	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.806
GNAZ	LOC110950870	ENSAPOP00000010221	ENSAPOP00000018702	G protein subunit alpha z.	Uncharacterized protein.	0.805
GNAZ	LOC110956829	ENSAPOP00000010221	ENSAPOP00000032677	G protein subunit alpha z.	GNAS complex locus.	0.810
GNAZ	LOC110961815	ENSAPOP00000010221	ENSAPOP00000001906	G protein subunit alpha z.	Glutamate receptor, metabotropic 5a.	0.879
HOMER1	ENSAPOP00000026860	ENSAPOP00000005151	ENSAPOP00000026860	Homer scaffold protein 1.	Homer scaffold protein 3b.	0.880
HOMER1	LOC110950711	ENSAPOP00000005151	ENSAPOP00000020134	Homer scaffold protein 1.	WH1 domain-containing protein.	0.880
HOMER1	LOC110961815	ENSAPOP00000005151	ENSAPOP00000001906	Homer scaffold protein 1.	Glutamate receptor, metabotropic 5a.	0.882
HOMER1	LOC110963080	ENSAPOP00000005151	ENSAPOP00000018412	Homer scaffold protein 1.	Homer scaffold protein 1b.	0.809
HOMER2	ENSAPOP00000026860	ENSAPOP00000003340	ENSAPOP00000026860	Homer scaffold protein 2.	Homer scaffold protein 3b.	0.883
HOMER2	LOC110950711	ENSAPOP00000003340	ENSAPOP00000020134	Homer scaffold protein 2.	WH1 domain-containing protein.	0.883
HOMER2	LOC110961815	ENSAPOP00000003340	ENSAPOP00000001906	Homer scaffold protein 2.	Glutamate receptor, metabotropic 5a.	0.882
HOMER2	LOC110963080	ENSAPOP00000003340	ENSAPOP00000018412	Homer scaffold protein 2.	Homer scaffold protein 1b.	0.887
LOC110950711	HOMER1	ENSAPOP00000020134	ENSAPOP00000005151	WH1 domain-containing protein.	Homer scaffold protein 1.	0.880
LOC110950711	HOMER2	ENSAPOP00000020134	ENSAPOP00000003340	WH1 domain-containing protein.	Homer scaffold protein 2.	0.883
LOC110950711	LOC110961815	ENSAPOP00000020134	ENSAPOP00000001906	WH1 domain-containing protein.	Glutamate receptor, metabotropic 5a.	0.925