Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110957584RAB8A, member RAS oncogene family. (206 aa)    
Predicted Functional Partners:
c9orf72
Zgc:100846.
    
 0.912
wdr41
WD repeat domain 41.
     
 0.905
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.887
LOC110971651
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.887
sqstm1
Sequestosome 1.
    
 0.875
LOC110962946
Mical-like 2b.
    
 0.870
ENSAPOP00000034909
Calponin-homology (CH) domain-containing protein.
    
 0.870
rab39b
Uncharacterized protein.
     
  0.841
rilpl2
Rab interacting lysosomal protein-like 2.
   
 
 0.839
rab14
RAB14, member RAS oncogene family.
   
 0.835
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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