STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)    
Predicted Functional Partners:
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
nop56
NOP56 ribonucleoprotein homolog.
   
 0.999
fbl
Fibrillarin.
   
 0.999
utp15
UTP15 small subunit processome component.
   
 0.998
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.998
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 0.997
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.995
ppih
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.994
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
 0.993
ENSAPOP00000029533
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.991
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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