Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110948293RRM domain-containing protein. (249 aa)    
Predicted Functional Partners:
LOC110965336
RNA binding fox-1 homolog 2.
  
 
 0.702
LOC110953124
RRM domain-containing protein.
  
 
 0.688
rbfox1
RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.
  
 
 0.678
LOC110954930
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
0.653
sf3b1
Splicing factor 3b, subunit 1.
     
 0.630
sf3b4
Splicing factor 3b, subunit 4.
     
 0.627
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
     
 0.622
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
    
  0.615
sf3b2
Splicing factor 3b, subunit 2.
     
  0.614
sf3b3
Splicing factor 3b, subunit 3.
     
  0.614
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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