STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm8Lysine (K)-specific demethylase 8. (406 aa)    
Predicted Functional Partners:
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.907
rccd1
RCC1 domain containing 1.
    
 
 0.904
ENSAPOP00000000601
BHLH domain-containing protein.
    
 0.707
NPAS3
Neuronal PAS domain protein 3.
    
 0.707
ENSAPOP00000014156
Uncharacterized protein.
    
 0.707
npas1
Neuronal PAS domain protein 1.
    
 0.707
LOC110957545
Endothelial PAS domain protein 1b.
    
 0.707
LOC110953874
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.707
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.707
LOC110970155
Coiled-coil domain containing 130.
    
   0.673
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.