STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110964113Remodeling and spacing factor 1b, tandem duplicate 1. (1700 aa)    
Predicted Functional Partners:
LOC110962034
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.937
ENSAPOP00000024610
Uncharacterized protein.
    
  0.760
ENSAPOP00000028898
Uncharacterized protein.
    
  0.760
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.744
LOC110948929
Bromodomain PHD finger transcription factor.
   
 
 0.744
cenpi
Centromere protein I.
  
 
 0.727
LOC110966106
Nipped-B protein.
   
 
 0.689
LOC110954525
Nipped-B protein.
   
 
 0.689
arid4b
Translocase of outer mitochondrial membrane 20.
   
    0.682
arid4a
AT rich interactive domain 4A (RBP1-like).
   
    0.682
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.