STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110964113Remodeling and spacing factor 1b, tandem duplicate 1. (1700 aa)    
Predicted Functional Partners:
LOC110962034
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.988
LOC110968032
PHD-type domain-containing protein.
     
 
0.935
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.850
LOC110948929
Bromodomain PHD finger transcription factor.
   
 
 0.850
chrac1
Chromatin accessibility complex subunit 1.
     
 0.774
virma
Vir like m6A methyltransferase associated.
   
   0.765
ENSAPOP00000024610
Uncharacterized protein.
    
  0.758
ENSAPOP00000028898
Uncharacterized protein.
    
  0.758
arid4b
Translocase of outer mitochondrial membrane 20.
   
   0.739
arid4a
AT rich interactive domain 4A (RBP1-like).
   
   0.739
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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