LOC110967643 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

LOC110967643

Uncharacterized protein. (923 aa)

Predicted Functional Partners:

fjx1

0.977

ENSAPOP00000026980

0.884

ENSAPOP00000025879

0.851

ENSAPOP00000025433

0.849

ENSAPOP00000006645

0.830

ENSAPOP00000030430

0.821

ENSAPOP00000021074

0.806

ENSAPOP00000025876

0.805

LOC110951636

0.796

NCSTN

0.792

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000006645	ENSAPOP00000025433	ENSAPOP00000006645	ENSAPOP00000025433	Uncharacterized protein.	Uncharacterized protein.	0.719
ENSAPOP00000006645	LOC110951636	ENSAPOP00000006645	ENSAPOP00000025845	Uncharacterized protein.	APH1B gamma secretase subunit.	0.796
ENSAPOP00000006645	LOC110967643	ENSAPOP00000006645	ENSAPOP00000002083	Uncharacterized protein.	Uncharacterized protein.	0.830
ENSAPOP00000006645	NCSTN	ENSAPOP00000006645	ENSAPOP00000005612	Uncharacterized protein.	Nicastrin.	0.792
ENSAPOP00000006645	fjx1	ENSAPOP00000006645	ENSAPOP00000019935	Uncharacterized protein.	Four-jointed box kinase 1.	0.977
ENSAPOP00000021074	LOC110967643	ENSAPOP00000021074	ENSAPOP00000002083	Uncharacterized protein.	Uncharacterized protein.	0.806
ENSAPOP00000025433	ENSAPOP00000006645	ENSAPOP00000025433	ENSAPOP00000006645	Uncharacterized protein.	Uncharacterized protein.	0.719
ENSAPOP00000025433	LOC110951636	ENSAPOP00000025433	ENSAPOP00000025845	Uncharacterized protein.	APH1B gamma secretase subunit.	0.796
ENSAPOP00000025433	LOC110967643	ENSAPOP00000025433	ENSAPOP00000002083	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSAPOP00000025433	NCSTN	ENSAPOP00000025433	ENSAPOP00000005612	Uncharacterized protein.	Nicastrin.	0.792
ENSAPOP00000025433	fjx1	ENSAPOP00000025433	ENSAPOP00000019935	Uncharacterized protein.	Four-jointed box kinase 1.	0.977
ENSAPOP00000025876	ENSAPOP00000025879	ENSAPOP00000025876	ENSAPOP00000025879	Uncharacterized protein.	Uncharacterized protein.	0.586
ENSAPOP00000025876	LOC110951636	ENSAPOP00000025876	ENSAPOP00000025845	Uncharacterized protein.	APH1B gamma secretase subunit.	0.600
ENSAPOP00000025876	LOC110967643	ENSAPOP00000025876	ENSAPOP00000002083	Uncharacterized protein.	Uncharacterized protein.	0.805
ENSAPOP00000025876	NCSTN	ENSAPOP00000025876	ENSAPOP00000005612	Uncharacterized protein.	Nicastrin.	0.501
ENSAPOP00000025876	fjx1	ENSAPOP00000025876	ENSAPOP00000019935	Uncharacterized protein.	Four-jointed box kinase 1.	0.945
ENSAPOP00000025879	ENSAPOP00000025876	ENSAPOP00000025879	ENSAPOP00000025876	Uncharacterized protein.	Uncharacterized protein.	0.586
ENSAPOP00000025879	LOC110951636	ENSAPOP00000025879	ENSAPOP00000025845	Uncharacterized protein.	APH1B gamma secretase subunit.	0.600
ENSAPOP00000025879	LOC110967643	ENSAPOP00000025879	ENSAPOP00000002083	Uncharacterized protein.	Uncharacterized protein.	0.851
ENSAPOP00000025879	NCSTN	ENSAPOP00000025879	ENSAPOP00000005612	Uncharacterized protein.	Nicastrin.	0.501