Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC110952302Si:dkey-183n20.15. (225 aa)    
Predicted Functional Partners:
rfk
Riboflavin kinase.
     
  0.716
LOC110970555
Carboxymethylenebutenolidase homolog (Pseudomonas).
     
 0.643
LOC110970500
Carboxymethylenebutenolidase homolog.
     
 0.643
LOC110945551
Carboxymethylenebutenolidase homolog.
     
 0.643
erlin1
ER lipid raft associated 1.
    
 
 0.626
LOC110962670
PHB domain-containing protein.
    
 
 0.626
rad52
RAD52 homolog, DNA repair protein.
    
 
 0.612
tpt1
Tumor protein, translationally-controlled 1; Belongs to the TCTP family.
      
 0.549
blm
BLM RecQ like helicase.
    
 
 0.548
ENSAPOP00000030017
Uncharacterized protein.
    
 
 0.548
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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