LOC110959380 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC110959380

Uncharacterized protein. (1085 aa)

Predicted Functional Partners:

LOC110951928

0.722

LOC110949257

0.722

garem1

0.708

garem2

0.708

LOC110957584

0.705

LOC110963505

0.705

LOC110948865

0.705

rab15

0.705

rab10

0.705

RAB8A

0.705

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110948865	LOC110959380	ENSAPOP00000004840	ENSAPOP00000002167	Multiple EGF-like-domains 8.	Uncharacterized protein.	0.705
LOC110948865	RAB8A	ENSAPOP00000004840	ENSAPOP00000018119	Multiple EGF-like-domains 8.	RAB8A, member RAS oncogene family.	0.865
LOC110949257	LOC110951928	ENSAPOP00000027975	ENSAPOP00000018512	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uncharacterized protein.	0.818
LOC110949257	LOC110959380	ENSAPOP00000027975	ENSAPOP00000002167	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uncharacterized protein.	0.722
LOC110951928	LOC110949257	ENSAPOP00000018512	ENSAPOP00000027975	Uncharacterized protein.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.818
LOC110951928	LOC110959380	ENSAPOP00000018512	ENSAPOP00000002167	Uncharacterized protein.	Uncharacterized protein.	0.722
LOC110957584	LOC110959380	ENSAPOP00000001935	ENSAPOP00000002167	RAB8A, member RAS oncogene family.	Uncharacterized protein.	0.705
LOC110959380	LOC110948865	ENSAPOP00000002167	ENSAPOP00000004840	Uncharacterized protein.	Multiple EGF-like-domains 8.	0.705
LOC110959380	LOC110949257	ENSAPOP00000002167	ENSAPOP00000027975	Uncharacterized protein.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.722
LOC110959380	LOC110951928	ENSAPOP00000002167	ENSAPOP00000018512	Uncharacterized protein.	Uncharacterized protein.	0.722
LOC110959380	LOC110957584	ENSAPOP00000002167	ENSAPOP00000001935	Uncharacterized protein.	RAB8A, member RAS oncogene family.	0.705
LOC110959380	LOC110963505	ENSAPOP00000002167	ENSAPOP00000004624	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.705
LOC110959380	RAB8A	ENSAPOP00000002167	ENSAPOP00000018119	Uncharacterized protein.	RAB8A, member RAS oncogene family.	0.705
LOC110959380	garem1	ENSAPOP00000002167	ENSAPOP00000021459	Uncharacterized protein.	GRB2 associated, regulator of MAPK1.	0.708
LOC110959380	garem2	ENSAPOP00000002167	ENSAPOP00000030867	Uncharacterized protein.	GRB2 associated, regulator of MAPK1-like.	0.708
LOC110959380	rab10	ENSAPOP00000002167	ENSAPOP00000010378	Uncharacterized protein.	RAB10, member RAS oncogene family.	0.705
LOC110959380	rab15	ENSAPOP00000002167	ENSAPOP00000006865	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.705
LOC110963505	LOC110959380	ENSAPOP00000004624	ENSAPOP00000002167	RAB15, member RAS oncogene family.	Uncharacterized protein.	0.705
RAB8A	LOC110948865	ENSAPOP00000018119	ENSAPOP00000004840	RAB8A, member RAS oncogene family.	Multiple EGF-like-domains 8.	0.865
RAB8A	LOC110959380	ENSAPOP00000018119	ENSAPOP00000002167	RAB8A, member RAS oncogene family.	Uncharacterized protein.	0.705