LOC110968328 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110968328

Uncharacterized protein. (625 aa)

Predicted Functional Partners:

rabgef1

0.986

LOC110952718

0.986

LOC110960074

0.986

rabep1

0.950

ENSAPOP00000010389

0.947

sorl1

0.926

igf2r

0.915

GGA1

0.896

ENSAPOP00000010393

0.885

gga3

0.883

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000010389	GGA1	ENSAPOP00000010389	ENSAPOP00000001523	GAT domain-containing protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.934
ENSAPOP00000010389	LOC110952718	ENSAPOP00000010389	ENSAPOP00000010472	GAT domain-containing protein.	Uncharacterized protein.	0.654
ENSAPOP00000010389	LOC110960074	ENSAPOP00000010389	ENSAPOP00000019535	GAT domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.654
ENSAPOP00000010389	LOC110968328	ENSAPOP00000010389	ENSAPOP00000002186	GAT domain-containing protein.	Uncharacterized protein.	0.947
ENSAPOP00000010389	igf2r	ENSAPOP00000010389	ENSAPOP00000030698	GAT domain-containing protein.	Insulin-like growth factor 2 receptor.	0.921
ENSAPOP00000010389	rabep1	ENSAPOP00000010389	ENSAPOP00000027791	GAT domain-containing protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.962
ENSAPOP00000010389	rabgef1	ENSAPOP00000010389	ENSAPOP00000000966	GAT domain-containing protein.	Uncharacterized protein.	0.654
ENSAPOP00000010393	GGA1	ENSAPOP00000010393	ENSAPOP00000001523	VHS domain-containing protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.870
ENSAPOP00000010393	LOC110952718	ENSAPOP00000010393	ENSAPOP00000010472	VHS domain-containing protein.	Uncharacterized protein.	0.654
ENSAPOP00000010393	LOC110960074	ENSAPOP00000010393	ENSAPOP00000019535	VHS domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.654
ENSAPOP00000010393	LOC110968328	ENSAPOP00000010393	ENSAPOP00000002186	VHS domain-containing protein.	Uncharacterized protein.	0.885
ENSAPOP00000010393	igf2r	ENSAPOP00000010393	ENSAPOP00000030698	VHS domain-containing protein.	Insulin-like growth factor 2 receptor.	0.921
ENSAPOP00000010393	rabep1	ENSAPOP00000010393	ENSAPOP00000027791	VHS domain-containing protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.962
ENSAPOP00000010393	rabgef1	ENSAPOP00000010393	ENSAPOP00000000966	VHS domain-containing protein.	Uncharacterized protein.	0.654
GGA1	ENSAPOP00000010389	ENSAPOP00000001523	ENSAPOP00000010389	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	GAT domain-containing protein.	0.934
GGA1	ENSAPOP00000010393	ENSAPOP00000001523	ENSAPOP00000010393	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	VHS domain-containing protein.	0.870
GGA1	LOC110952718	ENSAPOP00000001523	ENSAPOP00000010472	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Uncharacterized protein.	0.986
GGA1	LOC110960074	ENSAPOP00000001523	ENSAPOP00000019535	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.986
GGA1	LOC110968328	ENSAPOP00000001523	ENSAPOP00000002186	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Uncharacterized protein.	0.896
GGA1	gga3	ENSAPOP00000001523	ENSAPOP00000016852	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.873