Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110968328Uncharacterized protein. (625 aa)    
Predicted Functional Partners:
ENSAPOP00000010389
GAT domain-containing protein.
  
  0.963
ENSAPOP00000010393
VHS domain-containing protein.
   
  0.954
gga3
Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.
   
  0.954
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.926
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.897
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 
 0.879
rabgef1
Uncharacterized protein.
   
 0.876
LOC110960074
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.876
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
     
  0.872
LOC110958642
Uncharacterized protein.
     
  0.872
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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