STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110970775Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
srf
MADS-box domain-containing protein.
    
 0.651
SRF
Serum response factor.
    
 0.651
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.583
ldb1
LIM-domain binding 1b.
    
 0.572
LOC110959119
LIM domain binding 1a.
    
 0.572
LOC110956568
LIM domain binding 2a.
    
 0.572
figla
Folliculogenesis specific bHLH transcription factor.
   
 0.544
LOC110967147
Complexin 3b.
     
 0.531
LOC110960201
LIM homeobox 4.
   
0.521
LHX3
LIM homeobox 3.
   
0.521
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.