Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppp1r10Protein phosphatase 1, regulatory subunit 10. (811 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
 0.947
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.935
sf3a3
Splicing factor 3a, subunit 3.
   
 0.927
sf3a1
Splicing factor 3a, subunit 1.
   
 0.913
LOC110954129
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.897
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.897
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.893
sf3a2
Splicing factor 3a, subunit 2.
   
 0.887
ENSAPOP00000018988
Uncharacterized protein.
   
 0.887
rbm17
RNA binding motif protein 17.
   
 0.879
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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