abhd14a protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

abhd14a

Abhydrolase domain containing 14A. (268 aa)

Predicted Functional Partners:

LOC110970219

0.798

ENSAPOP00000020317

0.721

gart

0.721

aldh4a1

0.685

ndufab1

0.677

ENSAPOP00000017372

0.677

hdhd2

0.634

isoc2

0.633

pus7

0.633

mettl6

0.628

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000017372	ENSAPOP00000020317	ENSAPOP00000017372	ENSAPOP00000020317	Uncharacterized protein.	GARS_A domain-containing protein.	0.834
ENSAPOP00000017372	LOC110970219	ENSAPOP00000017372	ENSAPOP00000001077	Uncharacterized protein.	Malate synthase-like.	0.731
ENSAPOP00000017372	abhd14a	ENSAPOP00000017372	ENSAPOP00000002353	Uncharacterized protein.	Abhydrolase domain containing 14A.	0.677
ENSAPOP00000017372	aldh4a1	ENSAPOP00000017372	ENSAPOP00000008420	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.459
ENSAPOP00000017372	gart	ENSAPOP00000017372	ENSAPOP00000026241	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.834
ENSAPOP00000017372	isoc2	ENSAPOP00000017372	ENSAPOP00000008171	Uncharacterized protein.	Isochorismatase domain containing 2.	0.489
ENSAPOP00000017372	pus7	ENSAPOP00000017372	ENSAPOP00000025475	Uncharacterized protein.	Pseudouridine synthase 7.	0.730
ENSAPOP00000020317	ENSAPOP00000017372	ENSAPOP00000020317	ENSAPOP00000017372	GARS_A domain-containing protein.	Uncharacterized protein.	0.834
ENSAPOP00000020317	LOC110970219	ENSAPOP00000020317	ENSAPOP00000001077	GARS_A domain-containing protein.	Malate synthase-like.	0.860
ENSAPOP00000020317	abhd14a	ENSAPOP00000020317	ENSAPOP00000002353	GARS_A domain-containing protein.	Abhydrolase domain containing 14A.	0.721
ENSAPOP00000020317	aldh4a1	ENSAPOP00000020317	ENSAPOP00000008420	GARS_A domain-containing protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.855
ENSAPOP00000020317	gart	ENSAPOP00000020317	ENSAPOP00000026241	GARS_A domain-containing protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.998
ENSAPOP00000020317	isoc2	ENSAPOP00000020317	ENSAPOP00000008171	GARS_A domain-containing protein.	Isochorismatase domain containing 2.	0.435
ENSAPOP00000020317	ndufab1	ENSAPOP00000020317	ENSAPOP00000006298	GARS_A domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.834
ENSAPOP00000020317	pus7	ENSAPOP00000020317	ENSAPOP00000025475	GARS_A domain-containing protein.	Pseudouridine synthase 7.	0.558
LOC110970219	ENSAPOP00000017372	ENSAPOP00000001077	ENSAPOP00000017372	Malate synthase-like.	Uncharacterized protein.	0.731
LOC110970219	ENSAPOP00000020317	ENSAPOP00000001077	ENSAPOP00000020317	Malate synthase-like.	GARS_A domain-containing protein.	0.860
LOC110970219	abhd14a	ENSAPOP00000001077	ENSAPOP00000002353	Malate synthase-like.	Abhydrolase domain containing 14A.	0.798
LOC110970219	aldh4a1	ENSAPOP00000001077	ENSAPOP00000008420	Malate synthase-like.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.903
LOC110970219	gart	ENSAPOP00000001077	ENSAPOP00000026241	Malate synthase-like.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.860