Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC110963581IF rod domain-containing protein; Belongs to the intermediate filament family. (495 aa)    
Predicted Functional Partners:
LOC110950913
Keratin 5; Belongs to the intermediate filament family.
   
 0.801
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.792
cpsf1
Cleavage and polyadenylation specific factor 1.
    
  0.692
LOC110957098-2
Keratin 4; Belongs to the intermediate filament family.
   
 0.691
LOC110950914
Keratin 8; Belongs to the intermediate filament family.
   
 0.691
LOC110964394
RAN binding protein 2.
    
 0.679
LOC110972531
INO80 complex subunit E.
   
 0.672
LOC110972528
INO80 complex subunit E-like.
   
 0.672
ENSAPOP00000016008
PDZ domain-containing protein.
   
  0.671
RIMS2
Regulating synaptic membrane exocytosis 2.
   
  0.671
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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